https://bioruby.org

BioRubyBioRuby News 2025/03/08 BioRuby 2.0.6 released (ChangeLog) 2023/09/27 BioRuby 2.0.5 released (ChangeLog) 2022/09/13 BioRuby 2.0.4 released (ChangeLog) 2021/11/06 BioRuby 2.0.3 released (ChangeLog) 2020/12/31 BioRuby 2.0.2 released (ChangeLog) 2019/09/06 BioRuby 2.0.1 released (ChangeLog) 2019/06/14 BioRuby 2.0.0 released (ChangeLog) 2018/09/20 BioRuby 1.5.2 released (ChangeLog) 2016/09/07 BioRuby 1.5.1 released (ChangeLog) 2015/07/10-11 BOSC 2015 (Abstract) 2015/07/01 BioRuby 1.5.0 released (ChangeLog) 2010/12/24 BioRuby plugin system is released 2010/08/25 BioRuby paper is published ... more ... Links Ruby + bio | RubyGems.org Open-Bio.JP + ChemRuby O|B|F + BioPerl + Biopython + BioJava + BioDAS + BioMOBY Misc + Biohaskell + Biocaml + BioBIKE (BioLisp) + Bioinformatics.org BioRuby Open source bioinformatics library for Ruby Announcements BioRuby 2.0.6 is released on March 8, 2025. (Download) (Release Notes) (ChangeLog) Biogem is community developed plugins for the BioRuby. See the complete list, generic information, README, HOWTO and Tutorial. Overview BioRuby comes with a comprehensive set of free development tools and libraries for bioinformatics and molecular biology, for the Ruby programming language. BioRuby has components for sequence analysis, pathway analysis, protein modelling and phylogenetic analysis; it supports many widely used data formats and provides easy access to databases, external programs and public web services, including BLAST, KEGG, GenBank, MEDLINE and GO. BioRuby comes with a tutorial, documentation and an interactive environment, which can be used in the shell, and in the web browser. BioRuby is supported by the Open Bioinformatics Foundation or O|B|F. Reference BioRuby: Bioinformatics software for the Ruby programming language Naohisa Goto, Pjotr Prins, Mitsuteru Nakao, Raoul Bonnal, Jan Aerts and Toshiaki Katayama Bioinformatics (2010) 26(20): 2617-2619. doi: 10.1093/bioinformatics/btq475 Documentation API documentation Tutorial + Tutorial (Japanese) Wiki page + Sample codes Presentations BOSC 2015 + abst, slide, video BOSC 2013 BOSC 2012 RubyKaigi 2011 English slides Japanese slides Development GitHub BioRuby shell BioRuby comes with an interactive shell also capable as a plugin for the Ruby on Rails Download RubyGems package Source code archive Plugins (usage) Contributed codes Mailng lists English list Japanese list Community Contributors Blogs IPA Our project was supported by Information-technology Promotion Agency (IPA) as an Exploratory Software Project in 20051770407523https://bioruby.org

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